J3_3JCE_009

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCE_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0845

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

3JCE|1|A|C|2091
3JCE|1|A|U|2092
3JCE|1|A|G|2093
*
3JCE|1|A|C|2196
3JCE|1|A|U|2197
3JCE|1|A|A|2198
3JCE|1|A|A|2199
3JCE|1|A|C|2200
*
3JCE|1|A|G|2223
3JCE|1|A|G|2224
3JCE|1|A|A|2225
3JCE|1|A|C|2226
3JCE|1|A|A|2227
3JCE|1|A|G|2228

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28