3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
3JCE|1|a|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JCE_017 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1333
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

3JCE|1|a|U|672
3JCE|1|a|A|673
*
3JCE|1|a|U|717
3JCE|1|a|A|718
3JCE|1|a|C|719
3JCE|1|a|C|720
3JCE|1|a|G|721
3JCE|1|a|G|722
3JCE|1|a|U|723
3JCE|1|a|G|724
3JCE|1|a|G|725
*
3JCE|1|a|C|732
3JCE|1|a|G|733
3JCE|1|a|G|734

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain o
30S ribosomal protein S15
Chain r
30S ribosomal protein S18
Chain u
30S ribosomal protein S21

Coloring options:


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