3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JCE_039 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1083
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

3JCE|1|a|C|936
3JCE|1|a|A|937
3JCE|1|a|A|938
3JCE|1|a|G|939
*
3JCE|1|a|C|1344
3JCE|1|a|U|1345
3JCE|1|a|A|1346
3JCE|1|a|G|1347
3JCE|1|a|U|1348
3JCE|1|a|A|1349
3JCE|1|a|A|1350
*
3JCE|1|a|U|1372
3JCE|1|a|G|1373
3JCE|1|a|A|1374
3JCE|1|a|A|1375
3JCE|1|a|U|1376
3JCE|1|a|A|1377
3JCE|1|a|C|1378
3JCE|1|a|G|1379

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain 9
Transfer RNA; tRNA
Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9

Coloring options:


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