J3_3JCJ_006

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1505

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|G|1055
3JCJ|1|A|G|1056
3JCJ|1|A|A|1057
*
3JCJ|1|A|U|1081
3JCJ|1|A|U|1082
3JCJ|1|A|U|1083
3JCJ|1|A|A|1084
3JCJ|1|A|A|1085
3JCJ|1|A|A|1086
3JCJ|1|A|G|1087
*
3JCJ|1|A|C|1102
3JCJ|1|A|A|1103
3JCJ|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L11

Chain d

50S ribosomal protein L36

Chain e

50S ribosomal protein L10