J3_3JCJ_007

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_007 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1716

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JCJ|1|A|C|1298
3JCJ|1|A|G|1299
3JCJ|1|A|G|1300
3JCJ|1|A|A|1301
3JCJ|1|A|A|1302
3JCJ|1|A|G|1303
*
3JCJ|1|A|C|1625
3JCJ|1|A|A|1626
3JCJ|1|A|G|1627
*
3JCJ|1|A|C|1639
3JCJ|1|A|A|1640
3JCJ|1|A|A|1641
3JCJ|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains