J3_3JCJ_020
3D structure
- PDB id
- 3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 3JCJ|1|g|A|958, 3JCJ|1|g|A|975, 3JCJ|1|g|G|976, 3JCJ|1|g|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCJ_020 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1054
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JCJ|1|g|U|955
3JCJ|1|g|U|956
3JCJ|1|g|U|957
3JCJ|1|g|A|958
3JCJ|1|g|A|959
3JCJ|1|g|U|960
3JCJ|1|g|U|961
3JCJ|1|g|C|962
*
3JCJ|1|g|G|973
3JCJ|1|g|A|974
3JCJ|1|g|A|975
3JCJ|1|g|G|976
3JCJ|1|g|A|977
3JCJ|1|g|A|978
3JCJ|1|g|C|979
3JCJ|1|g|C|980
3JCJ|1|g|U|981
3JCJ|1|g|U|982
3JCJ|1|g|A|983
3JCJ|1|g|C|984
*
3JCJ|1|g|G|1221
3JCJ|1|g|G|1222
3JCJ|1|g|C|1223
3JCJ|1|g|U|1224
3JCJ|1|g|A|1225
Current chains
- Chain g
- 16S ribosomal RNA
Nearby chains
- Chain r
- 30S ribosomal protein S10
- Chain s
- 30S ribosomal protein S13
- Chain w
- 30S ribosomal protein S14
- Chain z
- 30S ribosomal protein S19
Coloring options: