3D structure

PDB id
3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
3JCJ|1|g|A|958, 3JCJ|1|g|A|975, 3JCJ|1|g|G|976, 3JCJ|1|g|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JCJ_020 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.1054
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

3JCJ|1|g|U|955
3JCJ|1|g|U|956
3JCJ|1|g|U|957
3JCJ|1|g|A|958
3JCJ|1|g|A|959
3JCJ|1|g|U|960
3JCJ|1|g|U|961
3JCJ|1|g|C|962
*
3JCJ|1|g|G|973
3JCJ|1|g|A|974
3JCJ|1|g|A|975
3JCJ|1|g|G|976
3JCJ|1|g|A|977
3JCJ|1|g|A|978
3JCJ|1|g|C|979
3JCJ|1|g|C|980
3JCJ|1|g|U|981
3JCJ|1|g|U|982
3JCJ|1|g|A|983
3JCJ|1|g|C|984
*
3JCJ|1|g|G|1221
3JCJ|1|g|G|1222
3JCJ|1|g|C|1223
3JCJ|1|g|U|1224
3JCJ|1|g|A|1225

Current chains

Chain g
16S ribosomal RNA

Nearby chains

Chain r
30S ribosomal protein S10
Chain s
30S ribosomal protein S13
Chain w
30S ribosomal protein S14
Chain z
30S ribosomal protein S19

Coloring options:


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