J3_3JCJ_024

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

3JCJ|1|g|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_024 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.0916

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

3JCJ|1|g|U|1073
3JCJ|1|g|G|1074
*
3JCJ|1|g|U|1083
3JCJ|1|g|G|1084
3JCJ|1|g|U|1085
3JCJ|1|g|U|1086
3JCJ|1|g|G|1087
*
3JCJ|1|g|C|1098
3JCJ|1|g|G|1099
3JCJ|1|g|C|1100
3JCJ|1|g|A|1101
3JCJ|1|g|A|1102

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S2

Chain k

30S ribosomal protein S5