J3_3JCJ_028
3D structure
- PDB id
- 3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 3JCJ|1|A|U|34, 3JCJ|1|A|U|448, 3JCJ|1|A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCJ_028 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0921
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JCJ|1|A|C|32
3JCJ|1|A|C|33
3JCJ|1|A|U|34
3JCJ|1|A|G|35
*
3JCJ|1|A|C|445
3JCJ|1|A|G|446
3JCJ|1|A|A|447
3JCJ|1|A|U|448
3JCJ|1|A|A|449
3JCJ|1|A|G|450
3JCJ|1|A|U|451
3JCJ|1|A|G|452
3JCJ|1|A|A|453
3JCJ|1|A|A|454
3JCJ|1|A|C|455
3JCJ|1|A|C|456
3JCJ|1|A|A|457
3JCJ|1|A|G|458
3JCJ|1|A|U|459
3JCJ|1|A|A|460
3JCJ|1|A|C|461
*
3JCJ|1|A|G|468
3JCJ|1|A|G|469
3JCJ|1|A|A|470
3JCJ|1|A|A|471
3JCJ|1|A|A|472
3JCJ|1|A|G|473
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L23
- Chain b
- 50S ribosomal protein L34
Coloring options: