J3_3JCJ_042
3D structure
- PDB id
- 3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 3JCJ|1|g|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCJ_042 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1304
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JCJ|1|g|U|672
3JCJ|1|g|A|673
*
3JCJ|1|g|U|717
3JCJ|1|g|A|718
3JCJ|1|g|C|719
3JCJ|1|g|C|720
3JCJ|1|g|G|721
3JCJ|1|g|G|722
3JCJ|1|g|U|723
3JCJ|1|g|G|724
3JCJ|1|g|G|725
*
3JCJ|1|g|C|732
3JCJ|1|g|G|733
3JCJ|1|g|G|734
Current chains
- Chain g
- 16S ribosomal RNA
Nearby chains
- Chain 1
- 30S ribosomal protein S18
- Chain 2
- 30S ribosomal protein S21
- Chain n
- 30S ribosomal protein S6
- Chain q
- 30S ribosomal protein S11
- Chain u
- 30S ribosomal protein S15
Coloring options: