J3_3JCN_017

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCN_017 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1026

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

3JCN|1|a|C|936
3JCN|1|a|A|937
3JCN|1|a|A|938
3JCN|1|a|G|939
*
3JCN|1|a|C|1344
3JCN|1|a|U|1345
3JCN|1|a|A|1346
3JCN|1|a|G|1347
3JCN|1|a|U|1348
3JCN|1|a|A|1349
3JCN|1|a|A|1350
*
3JCN|1|a|U|1372
3JCN|1|a|G|1373
3JCN|1|a|A|1374
3JCN|1|a|A|1375
3JCN|1|a|U|1376
3JCN|1|a|A|1377
3JCN|1|a|C|1378
3JCN|1|a|G|1379

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9