J3_3JCN_023

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

3JCN|1|a|U|1086

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCN_023 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.0992

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

3JCN|1|a|U|1073
3JCN|1|a|G|1074
*
3JCN|1|a|U|1083
3JCN|1|a|G|1084
3JCN|1|a|U|1085
3JCN|1|a|U|1086
3JCN|1|a|G|1087
*
3JCN|1|a|C|1098
3JCN|1|a|G|1099
3JCN|1|a|C|1100
3JCN|1|a|A|1101
3JCN|1|a|A|1102

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S2

Chain f

30S ribosomal protein S5