J3_3JCN_042
3D structure
- PDB id
- 3JCN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 3JCN|1|a|A|975, 3JCN|1|a|G|976, 3JCN|1|a|A|978
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCN_042 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1004
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JCN|1|a|U|955
3JCN|1|a|U|956
3JCN|1|a|U|957
3JCN|1|a|A|958
3JCN|1|a|A|959
3JCN|1|a|U|960
3JCN|1|a|U|961
3JCN|1|a|C|962
*
3JCN|1|a|G|973
3JCN|1|a|A|974
3JCN|1|a|A|975
3JCN|1|a|G|976
3JCN|1|a|A|977
3JCN|1|a|A|978
3JCN|1|a|C|979
3JCN|1|a|C|980
3JCN|1|a|U|981
3JCN|1|a|U|982
3JCN|1|a|A|983
3JCN|1|a|C|984
*
3JCN|1|a|G|1221
3JCN|1|a|G|1222
3JCN|1|a|C|1223
3JCN|1|a|U|1224
3JCN|1|a|A|1225
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain q
- 30S ribosomal protein S14
- Chain t
- 30S ribosomal protein S19
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