J3_3JCS_002
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAAAAG*CC*GA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_002 not in the Motif Atlas
- Geometric match to J3_5J7L_036
- Geometric discrepancy: 0.1265
- The information below is about J3_5J7L_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JCS|1|1|U|410
3JCS|1|1|U|411
3JCS|1|1|G|412
3JCS|1|1|A|413
3JCS|1|1|A|414
3JCS|1|1|A|415
3JCS|1|1|A|416
3JCS|1|1|G|417
*
3JCS|1|1|C|444
3JCS|1|1|C|445
*
3JCS|1|7|G|18
3JCS|1|7|A|19
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- ribosomal protein L4
- Chain W
- ribosomal protein L24
- Chain l
- ribosomal protein L39e
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