J3_3JCS_004
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACAA*UGUAG*UAUGAU
- Length
- 15 nucleotides
- Bulged bases
- 3JCS|1|1|A|947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_004 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.182
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
3JCS|1|1|A|879
3JCS|1|1|C|880
3JCS|1|1|A|881
3JCS|1|1|A|882
*
3JCS|1|1|U|914
3JCS|1|1|G|915
3JCS|1|1|U|916
3JCS|1|1|A|917
3JCS|1|1|G|918
*
3JCS|1|1|U|943
3JCS|1|1|A|944
3JCS|1|1|U|945
3JCS|1|1|G|946
3JCS|1|1|A|947
3JCS|1|1|U|948
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- 26S gamma ribosomal RNA
- Chain A
- ribosomal protein L2
- Chain Q
- ribosomal protein L19e
- Chain h
- ribosomal protein L34e
- Chain m
- ribosomal protein L43e
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