J3_3JCS_015
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAAAAGCAC*GAGUGAAAUAGAACC*GA
- Length
- 28 nucleotides
- Bulged bases
- 3JCS|1|1|U|439, 3JCS|1|1|A|443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_015 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2084
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JCS|1|1|U|410
3JCS|1|1|U|411
3JCS|1|1|G|412
3JCS|1|1|A|413
3JCS|1|1|A|414
3JCS|1|1|A|415
3JCS|1|1|A|416
3JCS|1|1|G|417
3JCS|1|1|C|418
3JCS|1|1|A|419
3JCS|1|1|C|420
*
3JCS|1|1|G|431
3JCS|1|1|A|432
3JCS|1|1|G|433
3JCS|1|1|U|434
3JCS|1|1|G|435
3JCS|1|1|A|436
3JCS|1|1|A|437
3JCS|1|1|A|438
3JCS|1|1|U|439
3JCS|1|1|A|440
3JCS|1|1|G|441
3JCS|1|1|A|442
3JCS|1|1|A|443
3JCS|1|1|C|444
3JCS|1|1|C|445
*
3JCS|1|7|G|18
3JCS|1|7|A|19
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- ribosomal protein L4
- Chain T
- ribosomal protein L22
- Chain W
- ribosomal protein L24
- Chain l
- ribosomal protein L39e
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