3D structure

PDB id
3JCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
UGAAGUG*CAA*UCUA
Length
14 nucleotides
Bulged bases
3JCT|1|1|A|1482
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JCT_007 not in the Motif Atlas
Homologous match to J3_5TBW_008
Geometric discrepancy: 0.0862
The information below is about J3_5TBW_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_10154.2
Basepair signature
cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
Number of instances in this motif group
3

Unit IDs

3JCT|1|1|U|1479
3JCT|1|1|G|1480
3JCT|1|1|A|1481
3JCT|1|1|A|1482
3JCT|1|1|G|1483
3JCT|1|1|U|1484
3JCT|1|1|G|1485
*
3JCT|1|1|C|1857
3JCT|1|1|A|1858
3JCT|1|1|A|1859
*
3JCT|1|1|U|1871
3JCT|1|1|C|1872
3JCT|1|1|U|1873
3JCT|1|1|A|1874

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain b
Nucleolar GTP-binding protein 1
Chain g
60S ribosomal protein L34-A

Coloring options:


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