J3_3JYV_002

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AUCG*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

3JYV|1|A|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JYV_002 not in the Motif Atlas

Geometric match to J3_8P9A_074

Geometric discrepancy: 0.2184

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JYV|1|A|A|881
3JYV|1|A|U|882
3JYV|1|A|C|883
3JYV|1|A|G|884
*
3JYV|1|A|U|927
3JYV|1|A|A|928
3JYV|1|A|A|929
3JYV|1|A|C|930
3JYV|1|A|U|931
3JYV|1|A|A|932
3JYV|1|A|C|933
3JYV|1|A|U|934
3JYV|1|A|G|935
*
3JYV|1|A|C|942
3JYV|1|A|A|943
3JYV|1|A|U|944
3JYV|1|A|U|945
3JYV|1|A|U|946

Current chains

Chain A

18S rRNA

Nearby chains

Chain K

40S ribosomal protein S14(A)

Chain O

40S ribosomal protein S13