J3_3JYV_009

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

3JYV|1|A|U|1471, 3JYV|1|A|G|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JYV_009 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1956

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

3JYV|1|A|C|1468
3JYV|1|A|A|1469
3JYV|1|A|C|1470
3JYV|1|A|U|1471
3JYV|1|A|G|1472
*
3JYV|1|A|C|1531
3JYV|1|A|G|1532
3JYV|1|A|U|1533
3JYV|1|A|G|1534
3JYV|1|A|C|1535
3JYV|1|A|U|1536
3JYV|1|A|G|1537
3JYV|1|A|G|1538
*
3JYV|1|A|C|1569
3JYV|1|A|G|1570
3JYV|1|A|A|1571
3JYV|1|A|G|1572

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain G

40S ribosomal protein S5

Chain M

40S ribosomal protein S18