J3_3OTO_009
3D structure
- PDB id
- 3OTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.69 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 3OTO|1|A|U|1240, 3OTO|1|A|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3OTO_009 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1133
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
3OTO|1|A|C|1237
3OTO|1|A|A|1238
3OTO|1|A|A|1239
3OTO|1|A|U|1240
3OTO|1|A|G|1241
*
3OTO|1|A|C|1296
3OTO|1|A|C|1297
3OTO|1|A|C|1298
3OTO|1|A|A|1299
3OTO|1|A|G|1300
3OTO|1|A|U|1301
3OTO|1|A|U|1302
3OTO|1|A|C|1303
*
3OTO|1|A|G|1334
3OTO|1|A|C|1335
3OTO|1|A|C|1336
3OTO|1|A|G|1337
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain U
- 30S RIBOSOMAL PROTEIN THX
Coloring options: