J3_3PIO_002

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

3PIO|1|X|G|699, 3PIO|1|X|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIO_002 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1464

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3PIO|1|X|U|696
3PIO|1|X|G|697
3PIO|1|X|A|698
3PIO|1|X|G|699
3PIO|1|X|C|700
3PIO|1|X|U|701
3PIO|1|X|A|702
*
3PIO|1|X|U|786
3PIO|1|X|A|787
3PIO|1|X|G|788
*
3PIO|1|X|C|804
3PIO|1|X|G|805
3PIO|1|X|A|806
3PIO|1|X|A|807

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2