J3_3PIO_005

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIO_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.0878

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3PIO|1|X|C|1311
3PIO|1|X|G|1312
3PIO|1|X|U|1313
3PIO|1|X|A|1314
3PIO|1|X|A|1315
3PIO|1|X|G|1316
*
3PIO|1|X|C|1641
3PIO|1|X|G|1642
3PIO|1|X|A|1643
*
3PIO|1|X|U|1656
3PIO|1|X|A|1657
3PIO|1|X|A|1658
3PIO|1|X|G|1659

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains