J3_3PIO_011

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIO_011 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.1629

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

3PIO|1|X|C|2769
3PIO|1|X|A|2770
3PIO|1|X|C|2771
*
3PIO|1|X|G|2781
3PIO|1|X|G|2782
3PIO|1|X|U|2783
3PIO|1|X|A|2784
3PIO|1|X|A|2785
3PIO|1|X|G|2786
*
3PIO|1|X|C|2864
3PIO|1|X|G|2865
3PIO|1|X|A|2866
3PIO|1|X|G|2867
3PIO|1|X|G|2868

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32