J3_3PIO_025

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

3PIO|1|X|C|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIO_025 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1515

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

3PIO|1|X|C|308
3PIO|1|X|G|309
3PIO|1|X|A|310
3PIO|1|X|A|311
3PIO|1|X|G|312
*
3PIO|1|X|C|327
3PIO|1|X|A|328
3PIO|1|X|C|329
3PIO|1|X|C|330
3PIO|1|X|U|331
3PIO|1|X|C|332
3PIO|1|X|A|333
3PIO|1|X|G|334
3PIO|1|X|A|335
3PIO|1|X|A|336
*
3PIO|1|X|U|348
3PIO|1|X|G|349
3PIO|1|X|U|350
3PIO|1|X|A|351
3PIO|1|X|G|352

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24