J3_3PIO_027

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIO_027 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1483

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

3PIO|1|X|G|1438
3PIO|1|X|G|1439
3PIO|1|X|G|1440
3PIO|1|X|A|1441
3PIO|1|X|C|1442
3PIO|1|X|G|1443
*
3PIO|1|X|C|1580
3PIO|1|X|C|1581
*
3PIO|1|X|G|1584
3PIO|1|X|A|1585
3PIO|1|X|A|1586
3PIO|1|X|A|1587
3PIO|1|X|A|1588
3PIO|1|X|G|1589
3PIO|1|X|C|1590

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2