J3_3R4F_001
3D structure
- PDB id
- 3R4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Prohead RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUG*CUUUG*UC
- Length
- 10 nucleotides
- Bulged bases
- 3R4F|1|A|U|45||||15_545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3R4F_001 not in the Motif Atlas
- Geometric match to J3_3R4F_002
- Geometric discrepancy: 0.0002
- The information below is about J3_3R4F_002
- Detailed Annotation
- phi29 pRNA
- Broad Annotation
- No text annotation
- Motif group
- J3_41097.1
- Basepair signature
- cWW-cWW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3R4F|1|A|G|4||||15_545
3R4F|1|A|U|5||||15_545
3R4F|1|A|G|6||||15_545
*
3R4F|1|A|C|43||||15_545
3R4F|1|A|U|44||||15_545
3R4F|1|A|U|45||||15_545
3R4F|1|A|U|46||||15_545
3R4F|1|A|G|47||||15_545
*
3R4F|1|A|U|62||||15_545
3R4F|1|A|C|63||||15_545
Current chains
- Chain A
- pRNA
Nearby chains
No other chains within 10ÅColoring options: