J3_3RKF_001
3D structure
- PDB id
- 3RKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of guanine riboswitch C61U/G37A double mutant bound to thio-guanine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- AUAAC*GGUUUCUACC*GACU
- Length
- 19 nucleotides
- Bulged bases
- 3RKF|1|A|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3RKF_001 not in the Motif Atlas
- Geometric match to J3_3RKF_003
- Geometric discrepancy: 0.0642
- The information below is about J3_3RKF_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44163.1
- Basepair signature
- cWW-cWW-tSW-F-F-F-cWW-cWS-cWW-F-F-F-cWW
- Number of instances in this motif group
- 9
Unit IDs
3RKF|1|A|A|21
3RKF|1|A|U|22
3RKF|1|A|A|23
3RKF|1|A|A|24
3RKF|1|A|C|25
*
3RKF|1|A|G|45
3RKF|1|A|G|46
3RKF|1|A|U|47
3RKF|1|A|U|48
3RKF|1|A|U|49
3RKF|1|A|C|50
3RKF|1|A|U|51
3RKF|1|A|A|52
3RKF|1|A|C|53
3RKF|1|A|C|54
*
3RKF|1|A|G|72
3RKF|1|A|A|73
3RKF|1|A|C|74
3RKF|1|A|U|75
Current chains
- Chain A
- Guanine riboswitch
Nearby chains
- Chain B
- Guanine riboswitch
- Chain C
- Guanine riboswitch
Coloring options: