3D structure

PDB id
3T1H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.11 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
3T1H|1|A|U|706
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3T1H_012 not in the Motif Atlas
Homologous match to J3_4LFB_012
Geometric discrepancy: 0.1027
The information below is about J3_4LFB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

3T1H|1|A|U|655
3T1H|1|A|G|656
*
3T1H|1|A|C|700
3T1H|1|A|G|701
3T1H|1|A|C|702
3T1H|1|A|C|703
3T1H|1|A|G|704
3T1H|1|A|A|705
3T1H|1|A|U|706
3T1H|1|A|G|707
3T1H|1|A|G|708
*
3T1H|1|A|C|715
3T1H|1|A|A|716
3T1H|1|A|G|717

Current chains

Chain A
16s rRNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain K
30S ribosomal protein S11
Chain O
30S ribosomal protein S15
Chain R
30S ribosomal protein S18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1568 s
Application loaded.