J3_3T1H_014

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

3T1H|1|A|A|50, 3T1H|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3T1H_014 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0546

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3T1H|1|A|G|46
3T1H|1|A|C|47
3T1H|1|A|C|48
3T1H|1|A|U|49
3T1H|1|A|A|50
3T1H|1|A|A|51
3T1H|1|A|G|52
*
3T1H|1|A|U|354
3T1H|1|A|A|355
3T1H|1|A|G|356
3T1H|1|A|G|357
3T1H|1|A|A|358
3T1H|1|A|A|359
3T1H|1|A|U|360
3T1H|1|A|C|361
3T1H|1|A|U|362
*
3T1H|1|A|A|388
3T1H|1|A|G|389
3T1H|1|A|C|390

Current chains

Chain A

16s rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16