J3_3T1Y_016

3D structure

PDB id

3T1Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

3T1Y|1|A|C|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3T1Y_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1762

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

3T1Y|1|A|C|967
3T1Y|1|A|U|968
3T1Y|1|A|U|969
3T1Y|1|A|G|970
3T1Y|1|A|A|971
3T1Y|1|A|C|972
3T1Y|1|A|A|973
3T1Y|1|A|U|974
*
3T1Y|1|A|A|1026
3T1Y|1|A|C|1027
3T1Y|1|A|A|1028
3T1Y|1|A|G|1029
*
3T1Y|1|A|C|1191
3T1Y|1|A|U|1192
3T1Y|1|A|U|1193
3T1Y|1|A|A|1194
3T1Y|1|A|C|1195
3T1Y|1|A|G|1196

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z