J3_3U5F_002

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

3U5F|1|6|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_002 not in the Motif Atlas

Geometric match to J3_8P9A_074

Geometric discrepancy: 0.0482

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3U5F|1|6|A|881
3U5F|1|6|U|882
3U5F|1|6|C|883
3U5F|1|6|A|884
*
3U5F|1|6|U|928
3U5F|1|6|A|929
3U5F|1|6|A|930
3U5F|1|6|C|931
3U5F|1|6|U|932
3U5F|1|6|A|933
3U5F|1|6|C|934
3U5F|1|6|U|935
3U5F|1|6|G|936
*
3U5F|1|6|C|943
3U5F|1|6|A|944
3U5F|1|6|U|945
3U5F|1|6|U|946
3U5F|1|6|U|947

Current chains

Chain 6

18S rRNA

Nearby chains