3D structure

PDB id
3U5F (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUCA*UAACUACUG*CAUUU
Length
18 nucleotides
Bulged bases
3U5F|1|6|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3U5F_002 not in the Motif Atlas
Geometric match to J3_8P9A_074
Geometric discrepancy: 0.0482
The information below is about J3_8P9A_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23895.1
Basepair signature
cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

3U5F|1|6|A|881
3U5F|1|6|U|882
3U5F|1|6|C|883
3U5F|1|6|A|884
*
3U5F|1|6|U|928
3U5F|1|6|A|929
3U5F|1|6|A|930
3U5F|1|6|C|931
3U5F|1|6|U|932
3U5F|1|6|A|933
3U5F|1|6|C|934
3U5F|1|6|U|935
3U5F|1|6|G|936
*
3U5F|1|6|C|943
3U5F|1|6|A|944
3U5F|1|6|U|945
3U5F|1|6|U|946
3U5F|1|6|U|947

Current chains

Chain 6
18S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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