J3_3U5F_002
3D structure
- PDB id
- 3U5F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 3U5F|1|6|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3U5F_002 not in the Motif Atlas
- Geometric match to J3_8P9A_074
- Geometric discrepancy: 0.0482
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3U5F|1|6|A|881
3U5F|1|6|U|882
3U5F|1|6|C|883
3U5F|1|6|A|884
*
3U5F|1|6|U|928
3U5F|1|6|A|929
3U5F|1|6|A|930
3U5F|1|6|C|931
3U5F|1|6|U|932
3U5F|1|6|A|933
3U5F|1|6|C|934
3U5F|1|6|U|935
3U5F|1|6|G|936
*
3U5F|1|6|C|943
3U5F|1|6|A|944
3U5F|1|6|U|945
3U5F|1|6|U|946
3U5F|1|6|U|947
Current chains
- Chain 6
- 18S rRNA
Nearby chains
No other chains within 10ÅColoring options: