J3_3U5F_006

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

3U5F|1|6|G|1199, 3U5F|1|6|G|1201, 3U5F|1|6|A|1203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_006 not in the Motif Atlas

Geometric match to J3_8P9A_078

Geometric discrepancy: 0.072

The information below is about J3_8P9A_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3U5F|1|6|C|1180
3U5F|1|6|U|1181
3U5F|1|6|U|1182
3U5F|1|6|A|1183
3U5F|1|6|A|1184
3U5F|1|6|U|1185
3U5F|1|6|U|1186
3U5F|1|6|U|1187
*
3U5F|1|6|G|1198
3U5F|1|6|G|1199
3U5F|1|6|G|1200
3U5F|1|6|G|1201
3U5F|1|6|A|1202
3U5F|1|6|A|1203
3U5F|1|6|A|1204
3U5F|1|6|C|1205
3U5F|1|6|U|1206
3U5F|1|6|C|1207
3U5F|1|6|A|1208
3U5F|1|6|C|1209
*
3U5F|1|6|G|1454
3U5F|1|6|G|1455
3U5F|1|6|C|1456
3U5F|1|6|C|1457
3U5F|1|6|G|1458

Current chains

Chain 6

18S rRNA

Nearby chains