J3_3U5F_007

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

3U5F|1|6|A|1217, 3U5F|1|6|G|1445, 3U5F|1|6|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_007 not in the Motif Atlas

Geometric match to J3_8P9A_079

Geometric discrepancy: 0.1156

The information below is about J3_8P9A_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.2

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

3U5F|1|6|C|1215
3U5F|1|6|C|1216
3U5F|1|6|A|1217
3U5F|1|6|G|1218
3U5F|1|6|A|1219
3U5F|1|6|C|1220
*
3U5F|1|6|G|1263
3U5F|1|6|G|1264
3U5F|1|6|G|1265
3U5F|1|6|U|1266
3U5F|1|6|G|1267
*
3U5F|1|6|U|1442
3U5F|1|6|U|1443
3U5F|1|6|A|1444
3U5F|1|6|G|1445
3U5F|1|6|A|1446
3U5F|1|6|C|1447
3U5F|1|6|G|1448

Current chains

Chain 6

18S rRNA

Nearby chains