Motif J3_87797.3 Version J3_87797.3 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 4-7 | 5-6 | 9-12 | 10-11 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_079 | 8P9A | 0.1211 | 3 | sR | SSU rRNA | C | 1215 | C | 1216 | G | 1218 | A | 1219 | C | 1220 | * | G | 1263 | G | 1264 | G | 1265 | U | 1266 | G | 1267 | * | U | 1442 | U | 1443 | A | 1444 | A | 1446 | G | 1448 | cWW | tWH | tHS | cWW | cWw | cWW |
| 2 | J3_9H3G_038 | 9H3G | 0.0000 | 3 | h1 | SSU rRNA | OMC | 1216 | C | 1217 | G | 1219 | A | 1220 | C | 1221 | * | G | 1264 | G | 1265 | G | 1266 | U | 1267 | G | 1268 | * | OMU | 1445 | U | 1446 | A | 1447 | A | 1449 | G | 1451 | cWW | tWH | tHS | cWW | cWw | cWW |
| 3 | J3_8GLP_019 | 8GLP | 0.0915 | 3 | S2 | SSU rRNA | C | 1272 | C | 1273 | G | 1275 | A | 1276 | C | 1277 | * | G | 1320 | G | 1321 | G | 1322 | U | 1323 | G | 1324 | * | U | 1504 | U | 1505 | A | 1506 | A | 1508 | G | 1510 | cWW | tWH | tHS | cWW | cWw | cWW |
| 4 | J3_8CRE_081 | 8CRE | 0.0984 | 3 | CM | SSU rRNA | C | 1200 | C | 1201 | G | 1203 | A | 1204 | C | 1205 | * | G | 1248 | G | 1249 | G | 1250 | U | 1251 | G | 1252 | * | U | 1428 | U | 1429 | A | 1430 | A | 1432 | G | 1434 | cWW | tWH | tHS | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAGAC*GGGUG*UUAGACG | 2 |
| OMCCAGAC*GGGUG*OMUUAGAUG | 1 |
| CCGGAC*GGGUG*UUAGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGA*GGU*UAGAC | 2 |
| CAGA*GGU*UAGAU | 1 |
| CGGA*GGU*UAGAU | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.09 | Max 0.14
Coloring options: