J3_3U5H_004

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_004 not in the Motif Atlas

Geometric match to J3_8P9A_052

Geometric discrepancy: 0.099

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

3U5H|1|5|G|1230
3U5H|1|5|A|1231
3U5H|1|5|C|1232
*
3U5H|1|5|G|1256
3U5H|1|5|C|1257
3U5H|1|5|U|1258
3U5H|1|5|A|1259
3U5H|1|5|A|1260
3U5H|1|5|G|1261
3U5H|1|5|G|1262
*
3U5H|1|5|C|1277
3U5H|1|5|A|1278
3U5H|1|5|C|1279

Current chains

Chain 5

25S rRNA

Nearby chains