J3_3U5H_006
3D structure
- PDB id
- 3U5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 3U5H|1|5|U|1840, 3U5H|1|5|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3U5H_006 not in the Motif Atlas
- Geometric match to J3_8P9A_054
- Geometric discrepancy: 0.041
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
3U5H|1|5|G|1488
3U5H|1|5|A|1489
3U5H|1|5|A|1490
3U5H|1|5|A|1491
*
3U5H|1|5|U|1837
3U5H|1|5|G|1838
3U5H|1|5|A|1839
3U5H|1|5|U|1840
3U5H|1|5|A|1841
3U5H|1|5|A|1842
3U5H|1|5|C|1843
*
3U5H|1|5|G|1852
3U5H|1|5|U|1853
3U5H|1|5|C|1854
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S rRNA
Coloring options: