J3_3U5H_007

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUG*CUUAUU*AAGACAUU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_007 not in the Motif Atlas

Geometric match to J3_8CRE_019

Geometric discrepancy: 0.1041

The information below is about J3_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84052.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3U5H|1|5|A|2432
3U5H|1|5|U|2433
3U5H|1|5|U|2434
3U5H|1|5|G|2435
*
3U5H|1|5|C|2512
3U5H|1|5|U|2513
3U5H|1|5|U|2514
3U5H|1|5|A|2515
3U5H|1|5|U|2516
3U5H|1|5|U|2517
*
3U5H|1|5|A|2590
3U5H|1|5|A|2591
3U5H|1|5|G|2592
3U5H|1|5|A|2593
3U5H|1|5|C|2594
3U5H|1|5|A|2595
3U5H|1|5|U|2596
3U5H|1|5|U|2597

Current chains

Chain 5

25S rRNA

Nearby chains