J3_3U5H_009

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

3U5H|1|5|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_009 not in the Motif Atlas

Geometric match to J3_8P9A_062

Geometric discrepancy: 0.0638

The information below is about J3_8P9A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

3U5H|1|5|C|2664
3U5H|1|5|U|2665
3U5H|1|5|C|2666
*
3U5H|1|5|G|2690
3U5H|1|5|A|2691
3U5H|1|5|A|2692
*
3U5H|1|5|U|2701
3U5H|1|5|A|2702
3U5H|1|5|A|2703
3U5H|1|5|A|2704
3U5H|1|5|A|2705
3U5H|1|5|G|2706

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 7

5S rRNA