J3_3U5H_010

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

3U5H|1|5|A|2887, 3U5H|1|5|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_010 not in the Motif Atlas

Geometric match to J3_8P9A_063

Geometric discrepancy: 0.0474

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_62630.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

3U5H|1|5|U|2886
3U5H|1|5|A|2887
3U5H|1|5|U|2888
3U5H|1|5|C|2889
*
3U5H|1|5|G|2914
3U5H|1|5|U|2915
3U5H|1|5|U|2916
*
3U5H|1|5|A|2930
3U5H|1|5|C|2931
3U5H|1|5|U|2932
3U5H|1|5|A|2933
3U5H|1|5|A|2934
3U5H|1|5|U|2935
3U5H|1|5|A|2936

Current chains

Chain 5

25S rRNA

Nearby chains