J3_3UD4_001
3D structure
- PDB id
- 3UD4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The C92U mutant c-di-GMP-I riboswitch bound to GpA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GCACAGGG*CAAAG*UUAUC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3UD4_001 not in the Motif Atlas
- Geometric match to J3_3MXH_001
- Geometric discrepancy: 0.1275
- The information below is about J3_3MXH_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_96372.2
- Basepair signature
- cWW-cHS-F-cWS-cWW-F-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
3UD4|1|R|G|14
3UD4|1|R|C|15
3UD4|1|R|A|16
3UD4|1|R|C|17
3UD4|1|R|A|18
3UD4|1|R|G|19
3UD4|1|R|G|20
3UD4|1|R|G|21
*
3UD4|1|R|C|46
3UD4|1|R|A|47
3UD4|1|R|A|48
3UD4|1|R|A|49
3UD4|1|R|G|50
*
3UD4|1|R|U|89
3UD4|1|R|U|90
3UD4|1|R|A|91
3UD4|1|R|U|92
3UD4|1|R|C|93
Current chains
- Chain R
- RNA (92-MER)
Nearby chains
- Chain B
- RNA (5'-R(*GP*A)-3')
Coloring options: