J3_488D_002
3D structure
- PDB id
- 488D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CATALYTIC RNA ENZYME-PRODUCT COMPLEX
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUGAUGAG*CGAAAC*GUCA
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_488D_002 not in the Motif Atlas
- Geometric match to J3_359D_001
- Geometric discrepancy: 0.1595
- The information below is about J3_359D_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_45099.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cSW-F-tSH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
488D|1|A|U|21
488D|1|A|C|30
488D|1|A|U|40
488D|1|A|G|50
488D|1|A|A|60
488D|1|A|U|70
488D|1|A|G|80
488D|1|A|A|90
488D|1|A|G|101
*
488D|1|D|C|111
488D|1|D|G|120
488D|1|D|A|130
488D|1|D|A|140
488D|1|D|A|151
488D|1|D|C|152
*
488D|1|D|G|162
488D|1|D|U|161
488D|1|D|C|170
488D|1|D|A|11
Current chains
- Chain A
- RNA RIBOZYME STRAND
- Chain D
- UNCLEAVED RNA SUBSTRATE
Nearby chains
- Chain B
- FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE
- Chain C
- SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE
Coloring options: