J3_4A1B_007
3D structure
- PDB id
- 4A1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAAG*CCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 4A1B|1|1|U|1864, 4A1B|1|1|A|1865
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4A1B_007 not in the Motif Atlas
- Geometric match to J3_8CRE_014
- Geometric discrepancy: 0.0893
- The information below is about J3_8CRE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
4A1B|1|1|G|1514
4A1B|1|1|A|1515
4A1B|1|1|A|1516
4A1B|1|1|G|1517
*
4A1B|1|1|C|1861
4A1B|1|1|C|1862
4A1B|1|1|A|1863
4A1B|1|1|U|1864
4A1B|1|1|A|1865
4A1B|1|1|A|1866
4A1B|1|1|C|1867
*
4A1B|1|1|G|1876
4A1B|1|1|U|1877
4A1B|1|1|C|1878
Current chains
- Chain 1
- 26S RRNA
Nearby chains
- Chain A
- RIBOSOMAL PROTEIN L37
- Chain B
- RPL39
- Chain L
- RPL34
Coloring options: