J3_4A1B_012

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

4A1B|1|1|A|2692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4A1B_012 not in the Motif Atlas

Geometric match to J3_8CRE_022

Geometric discrepancy: 0.0932

The information below is about J3_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4A1B|1|1|C|2653
4A1B|1|1|U|2654
4A1B|1|1|C|2655
*
4A1B|1|1|G|2679
4A1B|1|1|A|2680
4A1B|1|1|A|2681
*
4A1B|1|1|U|2690
4A1B|1|1|A|2691
4A1B|1|1|A|2692
4A1B|1|1|A|2693
4A1B|1|1|A|2694
4A1B|1|1|G|2695

Current chains

Chain 1

26S RRNA

Nearby chains