J3_4A2I_002

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4A2I_002 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1016

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4A2I|1|A|C|936
4A2I|1|A|A|937
4A2I|1|A|A|938
4A2I|1|A|G|939
*
4A2I|1|A|C|1344
4A2I|1|A|U|1345
4A2I|1|A|A|1346
4A2I|1|A|G|1347
4A2I|1|A|U|1348
4A2I|1|A|A|1349
4A2I|1|A|A|1350
*
4A2I|1|A|U|1372
4A2I|1|A|G|1373
4A2I|1|A|A|1374
4A2I|1|A|A|1375
4A2I|1|A|U|1376
4A2I|1|A|A|1377
4A2I|1|A|C|1378
4A2I|1|A|G|1379

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9