3D structure

PDB id
4A2I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor
Experimental method
ELECTRON MICROSCOPY
Resolution
16.5 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4A2I_007 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.1606
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4A2I|1|A|C|1063
4A2I|1|A|G|1064
4A2I|1|A|U|1065
4A2I|1|A|C|1066
4A2I|1|A|A|1067
4A2I|1|A|G|1068
*
4A2I|1|A|C|1107
4A2I|1|A|G|1108
4A2I|1|A|C|1109
4A2I|1|A|A|1110
4A2I|1|A|A|1111
4A2I|1|A|C|1112
4A2I|1|A|C|1113
*
4A2I|1|A|G|1187
4A2I|1|A|A|1188
4A2I|1|A|U|1189
4A2I|1|A|G|1190
4A2I|1|A|A|1191
4A2I|1|A|C|1192
4A2I|1|A|G|1193

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain C
30S RIBOSOMAL PROTEIN S3
Chain E
30S RIBOSOMAL PROTEIN S5
Chain I
30S RIBOSOMAL PROTEIN S9
Chain J
30S RIBOSOMAL PROTEIN S10
Chain N
30S RIBOSOMAL PROTEIN S14

Coloring options:


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