3D structure

PDB id
4ADV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4ADV_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1016
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

4ADV|1|A|C|936
4ADV|1|A|A|937
4ADV|1|A|A|938
4ADV|1|A|G|939
*
4ADV|1|A|C|1344
4ADV|1|A|U|1345
4ADV|1|A|A|1346
4ADV|1|A|G|1347
4ADV|1|A|U|1348
4ADV|1|A|A|1349
4ADV|1|A|A|1350
*
4ADV|1|A|U|1372
4ADV|1|A|G|1373
4ADV|1|A|A|1374
4ADV|1|A|A|1375
4ADV|1|A|U|1376
4ADV|1|A|A|1377
4ADV|1|A|C|1378
4ADV|1|A|G|1379

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
30S RIBOSOMAL PROTEIN S7
Chain I
30S RIBOSOMAL PROTEIN S9

Coloring options:


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