J3_4AQY_016

3D structure

PDB id

4AQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome-apramycin complexes

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4AQY|1|A|U|1212, 4AQY|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4AQY_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1944

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4AQY|1|A|C|990
4AQY|1|A|U|991
4AQY|1|A|U|992
4AQY|1|A|G|993
4AQY|1|A|A|994
4AQY|1|A|C|995
4AQY|1|A|A|996
4AQY|1|A|U|997
*
4AQY|1|A|A|1044
4AQY|1|A|C|1045
4AQY|1|A|A|1046
4AQY|1|A|G|1047
*
4AQY|1|A|C|1210
4AQY|1|A|U|1211
4AQY|1|A|U|1212
4AQY|1|A|A|1213
4AQY|1|A|C|1214
4AQY|1|A|G|1215

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14