J3_4BPP_002

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUUA*UAACUAAUG*CAUUU

Length

18 nucleotides

Bulged bases

4BPP|1|A|A|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4BPP_002 not in the Motif Atlas

Geometric match to J3_8P9A_074

Geometric discrepancy: 0.1018

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76375.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

4BPP|1|A|A|859
4BPP|1|A|U|860
4BPP|1|A|U|861
4BPP|1|A|A|862
*
4BPP|1|A|U|906
4BPP|1|A|A|907
4BPP|1|A|A|908
4BPP|1|A|C|909
4BPP|1|A|U|910
4BPP|1|A|A|911
4BPP|1|A|A|912
4BPP|1|A|U|913
4BPP|1|A|G|914
*
4BPP|1|A|C|921
4BPP|1|A|A|922
4BPP|1|A|U|923
4BPP|1|A|U|924
4BPP|1|A|U|925

Current chains

Chain A

18S RRNA

Nearby chains

Chain 4

40S RIBOSOMAL PROTEIN S3A

Chain 5

40S RIBOSOMAL PROTEIN RPS26E

Chain K

40S RIBOSOMAL PROTEIN RPS14E

Chain O

40S RIBOSOMAL PROTEIN RPS13E