J3_4BTS_006

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUAUG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4BTS_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1094

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4BTS|1|AA|C|1133
4BTS|1|AA|C|1134
4BTS|1|AA|A|1135
4BTS|1|AA|G|1136
*
4BTS|1|AA|C|1553
4BTS|1|AA|U|1554
4BTS|1|AA|A|1555
4BTS|1|AA|G|1556
4BTS|1|AA|U|1557
4BTS|1|AA|A|1558
4BTS|1|AA|A|1559
*
4BTS|1|AA|U|1581
4BTS|1|AA|G|1582
4BTS|1|AA|A|1583
4BTS|1|AA|U|1584
4BTS|1|AA|U|1585
4BTS|1|AA|A|1586
4BTS|1|AA|U|1587
4BTS|1|AA|G|1588

Current chains

Chain AA

18S ribosomal RNA

Nearby chains

Chain A1

40S RIBOSOMAL PROTEIN RPS28E

Chain AG

40S RIBOSOMAL PROTEIN RPS5E

Chain AI

40S RIBOSOMAL PROTEIN RPS16E