J3_4BTS_029

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGAG*CAG*CCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4BTS_029 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2222

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4BTS|1|CA|A|744
4BTS|1|CA|G|745
4BTS|1|CA|A|746
4BTS|1|CA|G|747
*
4BTS|1|CA|C|757
4BTS|1|CA|A|758
4BTS|1|CA|G|759
*
4BTS|1|CA|C|768
4BTS|1|CA|C|769
4BTS|1|CA|G|770
4BTS|1|CA|A|771
4BTS|1|CA|A|772
4BTS|1|CA|U|773

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain CD

40S RIBOSOMAL PROTEIN RPS9E

Chain CP

40S RIBOSOMAL PROTEIN S24

Chain CW

40S RIBOSOMAL PROTEIN RPS4E