J3_4BTS_048

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAGAC*GGGUG*CUAGACG

Length

18 nucleotides

Bulged bases

4BTS|1|DA|G|1416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4BTS_048 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.3217

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4BTS|1|DA|C|1187
4BTS|1|DA|A|1188
4BTS|1|DA|A|1189
4BTS|1|DA|G|1190
4BTS|1|DA|A|1191
4BTS|1|DA|C|1192
*
4BTS|1|DA|G|1235
4BTS|1|DA|G|1236
4BTS|1|DA|G|1237
4BTS|1|DA|U|1238
4BTS|1|DA|G|1239
*
4BTS|1|DA|C|1413
4BTS|1|DA|U|1414
4BTS|1|DA|A|1415
4BTS|1|DA|G|1416
4BTS|1|DA|A|1417
4BTS|1|DA|C|1418
4BTS|1|DA|G|1419

Current chains

Chain DA

18S ribosomal RNA

Nearby chains

Chain D7

40S RIBOSOMAL PROTEIN RPS10E

Chain D9

40S RIBOSOMAL PROTEIN RPS31E

Chain DN

40S RIBOSOMAL PROTEIN RPS29E